[Taxacom] raxmlGUI 1.0 released
Ingo Michalak
isoran at gmx.de
Thu Jan 19 11:31:43 CST 2012
2012
Dear all,
we have released raxmlGUI 1.0, an easy-to-use graphical interface for
RAxML (Stamatakis, 2006) at http://sourceforge.net/projects/raxmlgui/
The following main features are available:
* Perform all main RAxML phylogenetic analyses through an intuitive
graphical interface:
- Maximum Likelihood searches
- Bootstrap (BS) analyses
- Constructing consensus trees
- Ancestral state reconstruction
- Increase branch supports by pruning "rogue taxa" from your data (drop
set function, Pattengale et al. 2011)
* "Bootstopping" function to automatically determine the necessary
number of BS replicates
* Analyse mixed data sets (any combination of nucleotide, amino acid,
binary, and multi-state data is possible)
* Convert RAxML consensus trees to be compatible with the program FigTree
* A detailed manual is available in html and pdf format.
raxmlGUI is described in our application note:
Silvestro, D. & Michalak, I. (2011) raxmlGUI: A graphical front-end for
RAxML. Organisms Diversity & Evolution, DOI: 10.1007/s13127-011-0056-0
Suggestions and bug reports are much appreciated.
Best regards
Ingo Michalak and Daniele Silvestro
Biodiversity and Climate Research Centre (BiK-F)
Senckenberg Research Institute
Frankfurt/M, Germany
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